PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5366_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 586aa    MW: 66162.4 Da    PI: 4.5998
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5366_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1683.2e-52191452128
                                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkr 73 
                                          ppGfrFhPtdeelv +yLk+k+ +++++l +vi e+d+yk++P++Lp  +k+k+++++w+fFs+rd+ky++g r
  cra_locus_5366_iso_4_len_2388_ver_3  19 PPGFRFHPTDEELVLYYLKRKICRRRHRL-DVIGETDVYKWDPEELPeiSKLKTGDRQWFFFSPRDRKYPNGAR 91 
                                          9*************************999.9***************95449999******************** PP

                                  NAM  74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                          +nrat++gyWkatgkd+ +++ +++ vg+kktLvfy+grap+ge+tdWvmhey++
  cra_locus_5366_iso_4_len_2388_ver_3  92 SNRATRHGYWKATGKDRIITC-NSRPVGVKKTLVFYRGRAPTGERTDWVMHEYTM 145
                                          *********************.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-5814167IPR003441NAC domain
PROSITE profilePS5100555.22818167IPR003441NAC domain
PfamPF023651.4E-2719144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MKVTEKDMSS CFDDGKFFPP GFRFHPTDEE LVLYYLKRKI CRRRHRLDVI GETDVYKWDP  60
EELPEISKLK TGDRQWFFFS PRDRKYPNGA RSNRATRHGY WKATGKDRII TCNSRPVGVK  120
KTLVFYRGRA PTGERTDWVM HEYTMDEDEL KRCPAKEYYA LYKVFKKSGP GPKNGEQYGA  180
PFREEDWADE VEPNGLVERC KSVEQVAECV PVDDNRINSQ LQSQLEDLEE FMNRIADDAI  240
LEPPPVDDFA YALGELVREE EAQSNIVDQS SKEYNLPEQS IVVLPHCQQY DVQASYDLTQ  300
SATSQFQLHE TSEVTSAPKG HIPEPYIVEE DFLEDFLELD DLMGPDPSVQ RSHKQAEAHG  360
NEDSIDELDG LFEFELYKDA SLVLSEVGPG GEGQLCQTYV NNMVSKAADP VSNLYSNNFE  420
TGTVNYQQTS HSPIENEVNF QQWERCSVFT PAEAQQGTIT PAVPGVSYDG NSTNHHTGAN  480
EKGDDGSGSW FSSTLWSFVE NIPTTPASAS ENALVNRAFE RMSSFSRVRI NARNMNVVAA  540
GNTSATSRSS GKFRTGFYCF SLLGIMCAIL WMLIGTSVRV LGTSLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-471814515140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027094209.10.0NAC domain-containing protein 17-like isoform X1
RefseqXP_027148212.10.0NAC domain-containing protein 17-like
TrEMBLQ8LRL80.0Q8LRL8_PETHY; Nam-like protein 7
STRINGXP_009599075.10.0(Nicotiana tomentosiformis)
STRINGXP_009613291.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32122451