PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5389_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 118aa    MW: 13461.5 Da    PI: 9.5191
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5389_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.47.2e-0554861754
                                        HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                 HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                         ++++ L++l+ +      +K + a++L +A++YI+ L
  cra_locus_5389_iso_2_len_765_ver_3 54 GERIAALQQLVSPY-----GKTDTASVLLEAMQYIRFL 86
                                        57899999999999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.5E-83691IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.8873786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-104494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MQRLISSEQA VGGMMMEHKR CPIAFEESNI TTLTPKRHKA DLSLTTKEKK EKVGERIAAL  60
QQLVSPYGKT DTASVLLEAM QYIRFLHEQV KVCIHPAWLS LSFATIYYLF TNITLARX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024983535.15e-42transcription factor bHLH153
RefseqXP_024983536.15e-42transcription factor bHLH153
SwissprotQ7XJU23e-33BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A124SEK01e-39A0A124SEK0_CYNCS; Myc-type, basic helix-loop-helix (BHLH) domain-containing protein
TrEMBLA0A2J6K6772e-39A0A2J6K677_LACSA; Uncharacterized protein
STRINGevm.model.supercontig_9.3633e-37(Carica papaya)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]