PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5389_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 134aa    MW: 14755 Da    PI: 8.6287
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5389_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH149.3e-0539711754
                                         HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                  HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                          ++++ L++l+ +      +K + a++L +A++YI+ L
  cra_locus_5389_iso_4_len_1316_ver_3 39 GERIAALQQLVSPY-----GKTDTASVLLEAMQYIRFL 71
                                         57899999999999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-82180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.8872271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-112984IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.84E-53376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MEHKRCPIAF EESNITTLTP KRHKADLSLT TKEKKEKVGE RIAALQQLVS PYGKTDTASV  60
LLEAMQYIRF LHEQVKVLSA PYLCSSPTTD TPDLEPYSLR SKGLCLVPVS CTVGVASSNG  120
ADIWAPMKTS SPKF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007223604.17e-73transcription factor bHLH113 isoform X2
RefseqXP_007223605.19e-73transcription factor bHLH113 isoform X1
RefseqXP_020420852.17e-73transcription factor bHLH113 isoform X2
SwissprotQ7XJU21e-58BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A2R6S0E04e-73A0A2R6S0E0_ACTCH; Transcription factor bHLH113 like
STRINGEMJ248043e-72(Prunus persica)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]