PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5389_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 149aa    MW: 16375 Da    PI: 8.6286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5389_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.0001155861854
                                         HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                  HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                         ++++ L++l+ +      +K + a++L +A++YI+ L
  cra_locus_5389_iso_7_len_1114_ver_3 55 ERIAALQQLVSPY-----GKTDTASVLLEAMQYIRFL 86
                                         7899999999999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-83695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.8873786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-114499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-44891No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MQRLISSEQA VGGMMMEHKR CPIAFEESNI TTLTPKRHKA DLSLTTKEKK EKVGERIAAL  60
QQLVSPYGKT DTASVLLEAM QYIRFLHEQV KVLSAPYLCS SPTTDTPDLE PYSLRSKGLC  120
LVPVSCTVGV ASSNGADIWA PMKTSSPKF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007223604.11e-73transcription factor bHLH113 isoform X2
RefseqXP_007223605.11e-73transcription factor bHLH113 isoform X1
RefseqXP_020420852.11e-73transcription factor bHLH113 isoform X2
SwissprotQ7XJU23e-61BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A2R6S0E07e-74A0A2R6S0E0_ACTCH; Transcription factor bHLH113 like
STRINGEMJ248046e-73(Prunus persica)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]