PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5400_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 219aa MW: 24489.5 Da PI: 6.8954

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5400_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.3	2e-06	32	81	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rr + erE++ Rd++N f eL + + +a + + Ka++L+ +++ +k+L cra_locus_5400_iso_4_len_1337_ver_3 32 RRIHKAEREKQKRDHMNVLFLELSKAIEPA----NMSNGKASVLKDTIRLLKEL 81 788999*********************9....89999*******999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.27E-5	29	85	No hit	No description
SuperFamily	SSF47459	3.93E-11	29	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.407	31	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.2E-8	31	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0092	37	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MVSRNAISAS DDDGNVVSRL TSDTKKQGKV PRRIHKAERE KQKRDHMNVL FLELSKAIEP 60 ANMSNGKASV LKDTIRLLKE LLTQLDCLKK ENTTLLSESH YVNVEKDELY EENSVLKGQI 120 QKLRSDIEER YHSQASINLN SAQSEINPVA FQPPEDHFKL PSSDNASQAP SVVGPVFILP 180 VQHESQLVPQ SDIAASNVSK PQPRYPSASD SWPSHILDK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073951.1	6e-77	transcription factor bHLH47-like isoform X2
Refseq	XP_027073952.1	6e-77	transcription factor bHLH47-like isoform X2
Refseq	XP_027153377.1	6e-77	transcription factor bHLH47-like
Refseq	XP_027153378.1	6e-77	transcription factor bHLH47-like
TrEMBL	A0A068U3Q9	7e-77	A0A068U3Q9_COFCA; Uncharacterized protein
STRING	VIT_14s0108g00480.t01	1e-66	(Vitis vinifera)