PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_54213_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 94aa    MW: 10321.8 Da    PI: 9.7617
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_54213_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY53.16.3e-171402260
                                         EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                                 WRKY 22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60
                                         r+Y++C++a gCpvkkkv+rs ed+++v+ tYegeHnh+k
  cra_locus_54213_iso_1_len_478_ver_3  1 RAYFKCSFApGCPVKKKVQRSIEDQSIVVATYEGEHNHSK 40
                                         89******99****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081115.537141IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-15140IPR003657WRKY domain
PfamPF031061.1E-12138IPR003657WRKY domain
SMARTSM007743.1E-9140IPR003657WRKY domain
SuperFamilySSF1182901.12E-12139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
RAYFKCSFAP GCPVKKKVQR SIEDQSIVVA TYEGEHNHSK LEAGASTNTN STASRLNVTT  60
IAXXXXXXXX XXXXXXXKFQ SSTCSSHFGK NPST
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356251.12e-29PREDICTED: probable WRKY transcription factor 40
TrEMBLS0BAL51e-30S0BAL5_9SOLA; Putative transcription factor sperfamilly WRKY
STRINGPGSC0003DMT4000733967e-29(Solanum tuberosum)