PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5515_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family TCP
Protein Properties Length: 288aa    MW: 31807.7 Da    PI: 6.936
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5515_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1021e-3161192104
                                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.. 73 
                                           g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak++i+el+ ++ +++s    
  cra_locus_5515_iso_2_len_1680_ver_3   6 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKHEIDELPPLQMPPNSGNli 79 
                                          689*************************************************************7777744444 PP

                                  TCP  74 .eaesssssasnsssg..................kaaksaakskksqksa 104
                                           ++++ + s+s+ +s+                  +           q+ +
  cra_locus_5515_iso_2_len_1680_ver_3  80 iSSHNLQPSGSTWNSSdhiisrpkskqvsrrsddD----------HQEGS 119
                                          44444444444333333344433322222211111..........11111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.554866IPR017887Transcription factor TCP subgroup
PfamPF036341.2E-308128IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
RVSRAFGGKD RHSKVCTVRG LRDRRVRLSV PTAIQLYDLQ DRLGLNQPSK VVDWLLDAAK  60
HEIDELPPLQ MPPNSGNLII SSHNLQPSGS TWNSSDHIIS RPKSKQVSRR SDDDHQEGSK  120
QGHDFDQDDD NHHNGTYNVS SSNNFLISNN SAHQASYTSL LRWDPSTLSL AQSGLGAAPT  180
EDHNFHNFNV VSVASAAAAA PQVLVYQPPV GITQSYFPST AEYHDHVPKH INFQMLNNSN  240
NSLTDSTSQQ QSIRPFHMAN FLSTTTQKDR AGGNELSSNN EGDFGSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-181367155Putative transcription factor PCF6
5zkt_B1e-181367155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027077547.13e-77transcription factor TCP5-like
RefseqXP_027077548.13e-77transcription factor TCP5-like
TrEMBLA0A068U1B64e-75A0A068U1B6_COFCA; Uncharacterized protein
STRINGXP_009623901.17e-56(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499