PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_55436_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YA

Protein Properties

Length: 120aa MW: 13916.5 Da PI: 11.3555

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_55436_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	70.9	2.9e-22	1	47	11	58
CBFB_NFYA 11 yqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 y++Il+RRq Rak+e e+k +k+rkpylheSRh+hAlrR+Rg gGrF cra_locus_55436_iso_1_len_359_ver_3 1 YHGILRRRQIRAKAELERKA-IKARKPYLHESRHQHALRRARGMGGRF 47 9****************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	29.068	1	50	IPR001289	Nuclear transcription factor Y subunit A
SMART	SM00521	4.6E-18	1	50	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.1E-18	1	47	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
YHGILRRRQI RAKAELERKA IKARKPYLHE SRHQHALRRA RGMGGRFQKK NDKQQQETVA 60 SGDDLLANIN LNCEKDPNSS ESASXRCALI GRHRFMQRNC FHMTIKGLVL VVNRSAEFLX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-12	1	62	12	73	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022845842.1	7e-36	nuclear transcription factor Y subunit A-7-like
Refseq	XP_022845843.1	7e-36	nuclear transcription factor Y subunit A-7-like
Swissprot	Q945M9	7e-21	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A067KSV9	1e-30	A0A067KSV9_JATCU; Uncharacterized protein
STRING	XP_002523193.1	2e-29	(Ricinus communis)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]