PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5582_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-YB
Protein Properties Length: 244aa    MW: 27844.3 Da    PI: 5.8231
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5582_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.55.3e-5599194297
                                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlG 75 
                                          +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal++lG
  cra_locus_5582_iso_1_len_1029_ver_3  99 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALGSLG 172
                                          89************************************************************************ PP

                                NF-YB  76 fedyveplkvylkkyrelegek 97 
                                          f+dy+eplk+yl+kyrelege+
  cra_locus_5582_iso_1_len_1029_ver_3 173 FDDYAEPLKIYLHKYRELEGER 194
                                          ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-5497217IPR009072Histone-fold
SuperFamilySSF471132.17E-41101204IPR009072Histone-fold
PfamPF008081.4E-27104168IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-19132150No hitNo description
PROSITE patternPS006850135151IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.2E-19151169No hitNo description
PRINTSPR006151.2E-19170188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
CNSNDWRXXS SKFRWEWRII QQNLLLDLTK CFLRAQIGDS SSLICDQWCP GYMIAGDXLF  60
DWAGDTTTRS XHESVYILGA LKFNYEGAAT GTGDDGIIKE QDRLLPIANV GRIMKQILPP  120
NAKISKEAKE TMQECVSEFI SFVTGEASDK CHKEKRKTVN GDDICWALGS LGFDDYAEPL  180
KIYLHKYREL EGERSNQNNK TAGNMTIEER DEQSNCRSEP VRRQTVSPTI TNFNVTDAKY  240
SRRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4598189192Transcription factor HapC (Eurofung)
4g92_B5e-4598189192Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652046.12e-81PREDICTED: nuclear transcription factor Y subunit B-5
TrEMBLF6HPZ65e-80F6HPZ6_VITVI; Uncharacterized protein
STRINGVIT_07s0104g01640.t018e-81(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356