PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5600_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 262aa MW: 30067.5 Da PI: 8.8384

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5600_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107	2.2e-33	93	234	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrd 65 lp+G++F+P+d+e++ e+L++k+ +++ + +e+i+++d i++++P++Lp v+++ + +fF+k + cra_locus_5600_iso_1_len_783_ver_3 93 LPAGVKFDPSDQEIL-EHLEAKALSDTrklhplI--DEFIPTLDgengICYTHPEKLP-GVSKDGQIRHFFHKPS 163 799*********9.999999988885664322..334665555556******.555666777*** PP NAM 66 kkyatgkrknratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 k+y+tg+rk+r+++ + +W++tgk+++v++ +g l+g kk+Lv+y gr++k+ekt+Wvmh+y+l cra_locus_5600_iso_1_len_783_ver_3 164 KAYTTGTRKRRKVHtdseiggETRWHKTGKTRPVFV-GGILKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 234 *******7443455555788********.**********66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.06E-38	85	253	IPR003441	NAC domain
PROSITE profile	PS51005	33.55	93	253	IPR003441	NAC domain
Pfam	PF02365	2.1E-14	94	234	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
KILLNTHKTV EXVEESREEN PNWDGHKRKG KEMKWYNNES TRETSLQIVS APPHPPAPDI 60 TKVDEIRTLR CPSCGHTIQL QHQTAILEDL PGLPAGVKFD PSDQEILEHL EAKALSDTRK 120 LHPLIDEFIP TLDGENGICY THPEKLPGVS KDGQIRHFFH KPSKAYTTGT RKRRKVHTDS 180 EIGGETRWHK TGKTRPVFVG GILKGYKKIL VLYTNYGRQR KPEKTNWVMH QYHLGSDEEE 240 KDGELVVSKV FYQTQPRQCN TX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021596486.1	1e-132	NAC domain-containing protein 10-like
Refseq	XP_021596487.1	1e-132	NAC domain-containing protein 10-like
Refseq	XP_021596488.1	1e-132	NAC domain-containing protein 10-like
Swissprot	O49459	1e-117	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A2C9U8J0	1e-131	A0A2C9U8J0_MANES; Uncharacterized protein
STRING	POPTR_0004s04900.1	1e-129	(Populus trichocarpa)
STRING	XP_002509421.1	1e-129	(Ricinus communis)

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]