PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5600_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 242aa MW: 27575.8 Da PI: 9.731

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5600_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	68.2	2.2e-21	31	113	54	128
NAM 54 eekewyfFskrdkkyatgkrknratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgekt 119 + + +fF+k +k+y+tg+rk+r+++ + +W++tgk+++v++ +g l+g kk+Lv+y gr++k+ekt cra_locus_5600_iso_2_len_962_ver_3 31 DGQIRHFFHKPSKAYTTGTRKRRKVHtdseiggETRWHKTGKTRPVFV-GGILKGYKKILVLYtnYGRQRKPEKT 104 34455****************7443455555788********.**********66589*** PP NAM 120 dWvmheyrl 128 +Wvmh+y+l cra_locus_5600_iso_2_len_962_ver_3 105 NWVMHQYHL 113 *****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	21.577	1	132	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-24	30	132	IPR003441	NAC domain
Pfam	PF02365	1.4E-7	35	113	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
SWVDCDMKYK LLMREGHAFP LIVXYAGVSK DGQIRHFFHK PSKAYTTGTR KRRKVHTDSE 60 IGGETRWHKT GKTRPVFVGG ILKGYKKILV LYTNYGRQRK PEKTNWVMHQ YHLGSDEEEK 120 DGELVVSKVF YQTQPRQCNT STTTTTNVLK QVDNQKILSR QDGGINVNNM VTKSINPPNF 180 MEYYGGSHDH DDEYLSYNVG ISQSRGETPP QPHQLIPNMV HVHATDDGSS FIQLPSTASK 240 AQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019230485.1	1e-80	PREDICTED: NAC domain-containing protein 73-like isoform X1
Refseq	XP_019230486.1	1e-80	PREDICTED: NAC domain-containing protein 73-like isoform X2
Swissprot	O49459	8e-68	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A314KJF7	3e-79	A0A314KJF7_NICAT; Nac domain-containing protein 73
STRING	XP_009797428.1	6e-79	(Nicotiana sylvestris)

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]