PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_560_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YA

Protein Properties

Length: 136aa MW: 15675.9 Da PI: 10.1419

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_560_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	83.9	2.6e-26	14	65	1	53
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRg 53 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k rkpylheSRh+hA + +g cra_locus_560_iso_1_len_1142_ver_3 14 EEPVYVNAKQYHGILRRRQSRAKAEMEKKV-IKVRKPYLHESRHQHAXEKSKG 65 69**************************.**************988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.0E-25	12	73	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	28.275	13	73	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.3E-21	15	62	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.5E-19	16	38	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	18	38	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	6.5E-19	47	70	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MPQTRVPLPI PMEEEPVYVN AKQYHGILRR RQSRAKAEME KKVIKVRKPY LHESRHQHAX 60 EKSKGIWRPF SQYKEDPHLK HLAASTAPMT GHLNTNSQME LVGHSIMLTT YPYADPQYGA 120 LMTYGAPVHP QLFGMP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	6e-17	14	80	2	70	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028776987.1	2e-31	nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_028776988.1	2e-31	nuclear transcription factor Y subunit A-7-like isoform X2
Refseq	XP_028796874.1	2e-31	nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_028796875.1	2e-31	nuclear transcription factor Y subunit A-7-like isoform X2
Swissprot	Q945M9	4e-25	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A1Q3BGG8	3e-29	A0A1Q3BGG8_CEPFO; CBFB_NFYA domain-containing protein
TrEMBL	A0A2N9I0S9	1e-29	A0A2N9I0S9_FAGSY; Uncharacterized protein
TrEMBL	G0ZAK9	3e-29	G0ZAK9_POPEU; CCAAT-binding transcription factor subunit B
STRING	XP_006482871.1	4e-29	(Citrus sinensis)
STRING	XP_008790783.1	6e-29	(Phoenix dactylifera)
STRING	XP_006439109.1	4e-29	(Citrus clementina)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]