PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_560_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YA

Protein Properties

Length: 180aa MW: 20158.2 Da PI: 10.4449

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_560_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	105.9	3.4e-33	14	70	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k rkpylheSRh+hA+rR+RgsgGrF cra_locus_560_iso_5_len_1642_ver_3 14 EEPVYVNAKQYHGILRRRQSRAKAEMEKKV-IKVRKPYLHESRHQHAMRRARGSGGRF 70 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.7E-37	12	73	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.222	13	73	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	7.4E-29	15	70	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.8E-25	16	38	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	18	38	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	5.8E-25	47	70	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MPQTRVPLPI PMEEEPVYVN AKQYHGILRR RQSRAKAEME KKVIKVRKPY LHESRHQHAM 60 RRARGSGGRF LNTKKLESNG PNSASQEQTA GSTQSGNSSG SEHQTLDSNG NSDYRGGKGS 120 LIQNTYEEHS SSKGNINSDR HPSPYYPIST AGEQARHNFN QESWNMLMMN HVPRGAASSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-22	14	78	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027106866.1	3e-64	nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_027106867.1	3e-64	nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_027106868.1	2e-64	nuclear transcription factor Y subunit A-7-like isoform X2
Refseq	XP_027113738.1	3e-64	nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_027113739.1	2e-64	nuclear transcription factor Y subunit A-7-like isoform X2
Refseq	XP_027163127.1	3e-64	nuclear transcription factor Y subunit A-7-like
Swissprot	Q9LXV5	4e-36	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A068UH68	7e-61	A0A068UH68_COFCA; Uncharacterized protein
STRING	ERN00900	2e-45	(Amborella trichopoda)
STRING	VIT_13s0064g00860.t01	4e-45	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11232	20	25

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]