PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5618_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 303aa    MW: 33583.2 Da    PI: 7.6034
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5618_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.8e-07243289246
                                          SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
                      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                                          g W+  Ed+ l++a k ++++   +W++Ia+ ++ g++   c  r + 
  cra_locus_5618_iso_4_len_1561_ver_3 243 GGWSSGEDLALLNALKAFPKEtamRWEKIAAAVP-GKSKAACLKRMNE 289
                                          56********************************.*******888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.726151192IPR017877Myb-like domain
SMARTSM007170.0048155208IPR001005SANT/Myb domain
SuperFamilySSF466891.25E-5158211IPR009057Homeodomain-like
CDDcd001670.00436159205No hitNo description
SuperFamilySSF466897.8E-10240291IPR009057Homeodomain-like
SMARTSM007178.2E-7241293IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-6242296IPR009057Homeodomain-like
PROSITE profilePS500906.853243291IPR017877Myb-like domain
PfamPF002498.2E-6243290IPR001005SANT/Myb domain
CDDcd001674.28E-6245291No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005639Cellular Componentintegral component of nuclear inner membrane
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEFLDEDARP RFVLQSKASP QSNLPDSQTQ PLHKPTLIIS LSLSTIFLLL SFLYFTSEPL  60
NSLFIWVSLS LLVGPFAPLS LTAGDIRVGL GPPLEEPSKE IEQQSDDNSS KRVSKKSFKF  120
TRKPDDPIIG SDSVSGISSI KTNGSSIQLD NKDEVAEDWI EGEDDLLKKL MGKHPVGKPG  180
RWEAIAEGLK RRHSVENVIK RAKEMGEKKL NDDDSYNKFL KDRKPVDKRI EEGNDEVINI  240
GGGGWSSGED LALLNALKAF PKETAMRWEK IAAAVPGKSK AACLKRMNEL KKDFRTSKAS  300
SES
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027079999.11e-129transcription factor MAMYB-like
RefseqXP_027080000.11e-129transcription factor MAMYB-like
RefseqXP_027080001.11e-129transcription factor MAMYB-like
SwissprotQ9ASQ28e-74MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A068UZ621e-126A0A068UZ62_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000622211e-115(Solanum tuberosum)