PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_56567_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 115aa    MW: 12810.3 Da    PI: 10.0901
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_56567_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY48.51.8e-1586114129
                                          ---SS-EEEEEEE--TT-SS-EEEEEE-S CS
                                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCts 29 
                                          ++Dgy+WrKYGqK+ +++++pr+Y++C++
  cra_locus_56567_iso_1_len_344_ver_3  86 VKDGYQWRKYGQKVTRDNPCPRAYFKCSF 114
                                          58*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-1477114IPR003657WRKY domain
PROSITE profilePS5081114.61981115IPR003657WRKY domain
SuperFamilySSF1182904.58E-1382114IPR003657WRKY domain
SMARTSM007742.4E-586115IPR003657WRKY domain
PfamPF031066.8E-1187114IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
INGIYEQPNG VADDSAGSRK RKAESTSSLN NKNNKNKNLD VVHARSSESS SSDEGSCYKK  60
LKKEHIKAKV SIVSMKTDSS DTSLIVKDGY QWRKYGQKVT RDNPCPRAYF KCSFA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079997.11e-45probable WRKY transcription factor 60
TrEMBLS0BAL53e-45S0BAL5_9SOLA; Putative transcription factor sperfamilly WRKY
STRINGSolyc06g068460.2.15e-44(Solanum lycopersicum)