PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_56691_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family LSD
Protein Properties Length: 100aa    MW: 10274.2 Da    PI: 8.3667
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_56691_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1413.2e-132852125
                              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                         CggCrtlL+  rGA++VRC++C+tV
  cra_locus_56691_iso_1_len_299_ver_3 28 CGGCRTLLMHARGATNVRCSCCHTV 52
                                         ************************9 PP
2zf-LSD149.56.8e-167397125
                              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                         Cg+Crt+L+YP+GA sV+Ca+C+++
  cra_locus_56691_iso_1_len_299_ver_3 73 CGNCRTILMYPAGAASVKCAICHFI 97
                                         ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.105.9E-5495No hitNo description
SuperFamilySSF486953.63E-5495IPR011031Multihaem cytochrome
TIGRFAMsTIGR010531.7E-162555IPR005735Zinc finger, LSD1-type
PfamPF069435.5E-122852IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.3E-147099IPR005735Zinc finger, LSD1-type
PfamPF069433.5E-147397IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
GAANVRCTIC NVITAVPPAG MEMAQLICGG CRTLLMHARG ATNVRCSCCH TVNLVPAPPA  60
PAPAPNNVSH VNCGNCRTIL MYPAGAASVK CAICHFITNV
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096731.16e-50protein LSD1
SwissprotQ93ZB15e-37LOL1_ARATH; Protein LOL1
TrEMBLA0A2G9I4Y52e-48A0A2G9I4Y5_9LAMI; Uncharacterized protein
STRINGGLYMA05G30490.12e-44(Glycine max)
STRINGGLYMA08G13630.13e-44(Glycine max)
STRINGMigut.M01935.1.p2e-44(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]