PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_56951_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

YABBY

Protein Properties

Length: 108aa MW: 12325.8 Da PI: 10.1681

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_56951_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	78.7	1.8e-24	52	92	123	163
YABBY 123 qrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 r Psaynrf+keeiqrika+nP+i hreafsaaaknWa + cra_locus_56951_iso_1_len_414_ver_3 52 HRLPSAYNRFMKEEIQRIKAENPEIPHREAFSAAAKNWARY 92 69*************************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.7E-24	51	92	IPR006780	YABBY protein
SuperFamily	SSF47095	1.31E-7	51	90	IPR009071	High mobility group box domain
CDD	cd01390	5.49E-7	53	89	No hit	No description
Gene3D	G3DSA:1.10.30.10	2.1E-5	55	91	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
XAGGTLCVLL LQQKKTPWIW FNLQNIFATF VATFAXXXXX XXXXXXXXXX XHRLPSAYNR 60 FMKEEIQRIK AENPEIPHRE AFSAAAKNWA RYIPNGAPNG SLSESTNN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016453705.1	5e-30	PREDICTED: protein CRABS CLAW-like
TrEMBL	A0A068FKR1	5e-29	A0A068FKR1_9SOLN; CRC protein
TrEMBL	A0A068FN06	5e-29	A0A068FN06_SOLTO; CRC protein
STRING	XP_009627054.1	2e-29	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5210	23	39