PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5740_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 176aa    MW: 19776.3 Da    PI: 9.6921
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5740_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.89.1e-09113134426
                                         ---SGGGGTS--TTTTT-SS-SS CS
                             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                         + C+++++ G C +G++C++ H+
  cra_locus_5740_iso_1_len_994_ver_3 113 KVCNYWLQ-GNCTFGEKCRYLHS 134
                                         68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.1922652IPR000571Zinc finger, CCCH-type
SMARTSM003560.152651IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309109136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-8109134IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6111135IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-6112134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-7113133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.2E-5134176IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.95E-5137176IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.148147176IPR001680WD40 repeat
PROSITE profilePS5029412.236147176IPR017986WD40-repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MDVDGGKGVF HRLGPAAATA SSSNTDRQQK VCYHWRAGKC NRHPCPFLHR ELPPPPPHSM  60
GNGMASSKRP HGFAADDQYG GGMRRNPNFN NTWGRQRQEQ GYVNRGIVKK TEKVCNYWLQ  120
GNCTFGEKCR YLHSWFTGDC FSMLSQLEGH QKVVTGIALG SDKLYTGSKD DTVRIW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027110404.12e-85zinc finger CCCH domain-containing protein 48-like
RefseqXP_027161267.12e-85zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ25e-53C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A3Q7G4752e-79A0A3Q7G475_SOLLC; Uncharacterized protein
STRINGSolyc03g026350.2.14e-80(Solanum lycopersicum)