PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5740_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 538aa    MW: 59739.6 Da    PI: 8.0951
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5740_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.8e-08113134426
                                          ---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                          + C+++++ G C +G++C++ H+
  cra_locus_5740_iso_4_len_2418_ver_3 113 KVCNYWLQ-GNCTFGEKCRYLHS 134
                                          68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.1922652IPR000571Zinc finger, CCCH-type
SMARTSM003560.152651IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309109136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7109134IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6111135IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-6112134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-6113134IPR000571Zinc finger, CCCH-type
SMARTSM003209.9140177IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.9E-34142193IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.31E-35301527IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.9E-34308526IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM0032049318355IPR001680WD40 repeat
PROSITE profilePS5029418.299325448IPR017986WD40-repeat-containing domain
SMARTSM003200.0075362399IPR001680WD40 repeat
PfamPF004000.039366399IPR001680WD40 repeat
PROSITE profilePS5008211.745369408IPR001680WD40 repeat
SMARTSM003202.9E-4402439IPR001680WD40 repeat
PfamPF004000.0041404438IPR001680WD40 repeat
SMARTSM0032018443486IPR001680WD40 repeat
SMARTSM003209.2489526IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MDVDGGKGVF HRLGPAAATA SSSNTDRQQK VCYHWRAGKC NRHPCPFLHR ELPPPPPHSM  60
GNGMASSKRP HGFAADDQYG GGMRRNPNFN NTWGRQRQEQ GYVNRGIVKK TEKVCNYWLQ  120
GNCTFGEKCR YLHSWFTGDC FSMLSQLEGH QKVVTGIALG SDKLYTGSKD DTVKDYEGMX  180
RPGKYIYCLL FSSSIWYDEK FSIKXTETVR KPTICGCIIL LTHXFPIISI LPAAFINLAQ  240
MEKDLAILLN FKPVYSQFFX KNIFNKLWRS VNLISCGFPW FLQCAGLINL GAEIGCLLSE  300
GPWVFVGLTN LVKAWNTQTS TDLSLNGPVG QVYALVVGND MLFAGVQDGN ILAWKFNVAT  360
NCFEPAASLK GHTLAVVTLV VGANRLYSGS MDHSIRVWSL ENLQCLQTLT DHTDVVMSVL  420
CWEQFLLSCS LDKTVKVWAA TESGNLEVTY THSEDHGLLT LCGMHDAAAK PVLFCSCNDN  480
CIRVYDLPSF SERGKIFSKQ EVRSMQPGPG GLFFTGDGTG LVKVWQWLAE PAAARPPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-1231252537320Tako8
6g6n_A5e-1231252537320Tako8
6g6n_B5e-1231252537320Tako8
6g6n_C5e-1231252537320Tako8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027101027.11e-152LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ11e-138C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134