PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_57470_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

ERF

Protein Properties

Length: 135aa MW: 15102.6 Da PI: 5.1871

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_57470_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	22.2	3.6e-07	1	23	33	55
AP2 33 lgkfgtaeeAakaaiaarkkleg 55 lg+f taeeAa+a+++a+ l+g cra_locus_57470_iso_1_len_404_ver_3 1 LGTFETAEEAARAYDEAACLLRG 23 79****************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.77E-15	1	30	No hit	No description
PROSITE profile	PS51032	10.705	1	31	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.22E-8	1	32	IPR016177	DNA-binding domain
SMART	SM00380	5.9E-4	1	39	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-12	1	31	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
LGTFETAEEA ARAYDEAACL LRGSNTRTNF VTDYVSPDSP LASRIRNLLN NRKQKTNPKT 60 KTPNNTPTSS SSSSSSSLHS VSPSCQKIQE NNLLDFDDAY KPDMISNLCD EFDIDMRGRW 120 GLEQAFDHRF PFSTT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269\|PubMed:28028038, ECO:0000269\|PubMed:28068194, ECO:0000269\|PubMed:28503742}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269\|PubMed:28028038, ECO:0000269\|PubMed:28503742}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027072587.1	7e-34	ethylene-responsive transcription factor ERN1-like
Swissprot	A0A1X9PY88	1e-27	ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBL	A0A068V347	1e-33	A0A068V347_COFCA; Uncharacterized protein
STRING	XP_010097403.1	2e-29	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2018	22	61

Publications ? help Back to Top
Yano K, et al. Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads. DNA Res., 2017. 24(2): p. 193-203 [PMID:28028038] Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus. Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204 [PMID:28068194] Cerri MR, et al. The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus. New Phytol., 2017. 215(1): p. 323-337 [PMID:28503742]