PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_57500_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 190aa MW: 20825.8 Da PI: 7.6046

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_57500_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106	2.1e-33	52	107	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGG+++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ cra_locus_57500_iso_1_len_599_ver_3 52 KQRRCWSPELHRRFVNALQQLGGAQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 107 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.084	49	109	IPR017930	Myb domain
SuperFamily	SSF46689	3.81E-19	49	110	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.5E-30	50	110	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.3E-28	52	107	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-8	54	105	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
DELPIVPGFS LCTPEINVSR EDINYNGFSS KSSTSRSGSS SATNGQSQTA RKQRRCWSPE 60 LHRRFVNALQ QLGGAQVATP KQIRELMQVD GLTNDEVKSH LQKYRLHTRK ASASTMNTST 120 VQHLGLWVSQ EQCGESSKPS NSQSGSPQGP LHLARSSRGT SMMTGGDSME DEDDEKTESH 180 SWKSDIQLSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-14	52	105	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-14	52	105	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-14	52	105	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-14	52	105	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092742.1	7e-80	myb family transcription factor EFM
Swissprot	Q9FX84	1e-41	HHO6_ARATH; Transcription factor HHO6
TrEMBL	A0A067L2E9	4e-68	A0A067L2E9_JATCU; Uncharacterized protein
STRING	cassava4.1_009052m	5e-67	(Manihot esculenta)
STRING	XP_002521841.1	6e-67	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4361	24	43

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]