PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5882_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARR-B
Protein Properties Length: 638aa    MW: 72389.5 Da    PI: 5.8419
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5882_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like64.71.6e-20200249151
                              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                          k+r++Wt +LH++Fv+av+q+ G ek  Pk+il+lm+v+ Lt+e+v+SHLQ
  cra_locus_5882_iso_4_len_2744_ver_3 200 KTRVVWTVDLHQKFVKAVNQI-GFEKVGPKKILDLMGVPWLTRENVASHLQ 249
                                          68*******************.9**************************** PP
2Response_reg82.21.7e-27201281109
                                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTS CS
                         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepkl 72 
                                          vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +l
  cra_locus_5882_iso_4_len_2744_ver_3  20 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALDLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DL 91 
                                          89*********************.***************999999**********************6644.8* PP

                                          EEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                         Response_reg  73 piivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                          p+i+++  ge + + + ++ Ga d+l Kp+ ++el++
  cra_locus_5882_iso_4_len_2744_ver_3  92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 128
                                          **********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.2E-4417142No hitNo description
SuperFamilySSF521721.99E-3617151IPR011006CheY-like superfamily
SMARTSM004481.3E-3218130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.77319134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-2420129IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.44E-3021134No hitNo description
SuperFamilySSF466891.36E-13198250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-22199249IPR009057Homeodomain-like
TIGRFAMsTIGR015579.7E-19200250IPR006447Myb domain, plants
PfamPF002492.3E-6202249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MEVSGYPSPR TDAFPAGLRV LVVDDDPTWL KILEKMLKKC SYEVTTCGLA REALDLLRER  60
KDGFDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP  120
IRMKELRNIW QHVFRKRIHE VKEIENHEGF EEIQFMRNVC DQSEDRMFSS ANDLASGKKR  180
KDYENKHDDR ECSDSSSVKK TRVVWTVDLH QKFVKAVNQI GFEKVGPKKI LDLMGVPWLT  240
RENVASHLQV NICYANFSLI FHISDLCVLP PLSCVVPYMY VSVLGLLSNE RSHENVLFFC  300
LFLFQKYRLY LTRLQKEKEL TASFGVMKHS DISSKEQTGN HCLQNSVNMQ QTNGSCGISG  360
NKTAMQNIDF EIHEGDLKSL VKIPMVDANN GLGGDNPDSQ RGRRMNADHS FRKLDSDVKY  420
ATTIPEQYMW SAEGSEVQAN QERKQPFRPK PGFNPMPLPS LHQNIQFDCV RPTPSFVSKP  480
SNIHNDKLGG SEKKTIFVKS VSHGNMVDLL PVQPQSELTA TTSQEVLKPD PSSIVWSTKN  540
QRAADQIFVS DMESAQRSID LVGGWGLATW EENQQGCLIE ADIHRLTQGL QNIESFSYNE  600
AGIISEASSY LYDSLKFDYE MPLEPMEYSV IDQGLFIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-14196249154ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027100212.10.0two-component response regulator ORR26 isoform X1
RefseqXP_027152868.10.0two-component response regulator ORR26
TrEMBLA0A2R6RED20.0A0A2R6RED2_ACTCH; Two-component response regulator like
STRINGevm.model.supercontig_86.170.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67882433