PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5900_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HSF

Protein Properties

Length: 338aa MW: 38026.4 Da PI: 10.2901

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5900_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116.6	1.5e-36	29	121	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk 75 Fl+k+y++++d+++++++sws+++nsfvv++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ cra_locus_5900_iso_1_len_2156_ver_3 29 FLSKTYDMVDDPATDSVVSWSKTNNSFVVWNVPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR------ 96 9**************************************************************999...... PP TTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 76 ekiweFkhksFkkgkkellekikrkkse 103 weF+++ F +g+k+ll++i r+ks+ cra_locus_5900_iso_1_len_2156_ver_3 97 ---WEFANEGFLRGHKHLLKTISRRKST 121 ...********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.5E-39	19	113	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.18E-35	25	118	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	8.5E-62	25	118	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.4E-21	29	52	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	6.1E-32	29	118	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.4E-21	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	68	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.4E-21	80	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006886	Biological Process	intracellular protein transport
GO:0016192	Biological Process	vesicle-mediated transport
GO:0005634	Cellular Component	nucleus
GO:0016020	Cellular Component	membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005484	Molecular Function	SNAP receptor activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
XGEASRARTA TRANSSSSSS QAPPPPTPFL SKTYDMVDDP ATDSVVSWSK TNNSFVVWNV 60 PEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRGHKH LLKTISRRKS 120 THVQGQQQPT QVQNTSTGSC VEVGKFGLDE EVERLKRDKN VLMQELVRLR QQQQATDQQL 180 QTVGQRVHLM EQRQQQMMSF LAKAMQSPGF MAQLVHPQND SNRRISGINK KRRLPNQDEE 240 NLAGNHGATL PDGQIVKFQP QMNEAAKAVF RQILKINASS RLEQKINHAN GYLIDGAHTS 300 ANALESSSAS SRISGVTLSE VLPSVQPHVA SYVFELYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-25	22	121	12	123	Heat shock factor protein 1
5d5u_B	1e-25	29	118	29	129	Heat shock factor protein 1
5d5v_B	1e-25	29	118	29	129	Heat shock factor protein 1
5d5v_D	1e-25	29	118	29	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016439999.1	1e-170	PREDICTED: heat stress transcription factor A-1b-like
Swissprot	Q84T61	1e-137	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A2G9I194	1e-179	A0A2G9I194_9LAMI; Heat shock transcription factor
STRING	XP_009790324.1	1e-168	(Nicotiana sylvestris)

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]