PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_59851_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YC

Protein Properties

Length: 137aa MW: 15718.4 Da PI: 8.4927

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_59851_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	133.8	5.4e-42	58	136	1	76
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkr 71 ql++fw++q ie ++dfknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlr+w+h+eenkr cra_locus_59851_iso_2_len_407_ver_3 58 QLQNFWANQyqeIELVNDFKNHSLPLARIKKIMKADEDVRMISAEAPIVFARACEMFILELTLRAWNHTEENKR 131 89****9989999******************************************************* PP NF-YC 72 rtlkk 76 rtl+k cra_locus_59851_iso_2_len_407_ver_3 132 RTLQK 136 **9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.11E-27	47	136	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	4.0E-34	74	136	IPR009072	Histone-fold
Pfam	PF00808	8.0E-20	80	136	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
XPMLYGAPYH ANQMAGPSLP VSTGAQTVGL PASSGQMAQH QLAYQHIHQQ QQQQLQQQLQ 60 NFWANQYQEI ELVNDFKNHS LPLARIKKIM KADEDVRMIS AEAPIVFARA CEMFILELTL 120 RAWNHTEENK RRTLQKX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-43	65	136	2	73	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269\|PubMed:25105952}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006364716.1	6e-79	PREDICTED: nuclear transcription factor Y subunit C-9-like
Refseq	XP_006364717.1	6e-79	PREDICTED: nuclear transcription factor Y subunit C-9-like
Swissprot	Q8L4B2	7e-46	NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBL	M0ZUW6	1e-77	M0ZUW6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400008660	2e-78	(Solanum tuberosum)

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714] Bi C,Ma Y,Wang XF,Zhang DP Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis. Plant Mol. Biol., 2017. 95(4-5): p. 425-439 [PMID:28924726] Liu X, et al. Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering. Plant Physiol., 2018. 177(1): p. 105-114 [PMID:29599268]