PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5991_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 262aa    MW: 29762.8 Da    PI: 8.4527
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5991_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF1009.1e-32958150
                                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                         krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  cra_locus_5991_iso_1_len_1060_ver_3  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
                                         79**********************************************95 PP
2K-box99.45e-33811691098
                                K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                                          +e++++s+ qe++kLk+++e+Lqr+qRhllGedL++L++keLq Le+qLe +l + R++K+++++eq+eel++k
  cra_locus_5991_iso_1_len_1060_ver_3  81 AERETQSWFQEVSKLKAKYESLQRTQRHLLGEDLGPLNVKELQTLEKQLEGALVQARQRKTQIMVEQMEELRRK 154
                                          67899********************************************************************* PP

                                K-box  84 ekelqeenkaLrkkl 98 
                                          e++l + nk+L+ k+
  cra_locus_5991_iso_1_len_1060_ver_3 155 ERQLGDMNKQLKIKV 169
                                          ***********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.683161IPR002100Transcription factor, MADS-box
CDDcd002654.68E-45272No hitNo description
SuperFamilySSF554551.29E-33279IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-33323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-333859IPR002100Transcription factor, MADS-box
PfamPF014869.7E-3082169IPR002487Transcription factor, K-box
PROSITE profilePS5129716.15885175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009911Biological Processpositive regulation of flower development
GO:0010094Biological Processspecification of carpel identity
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSS  60
GISKTLERYQ RCCFSPQDNG AERETQSWFQ EVSKLKAKYE SLQRTQRHLL GEDLGPLNVK  120
ELQTLEKQLE GALVQARQRK TQIMVEQMEE LRRKERQLGD MNKQLKIKVS LEMSSLEADQ  180
GQGYRAAALP CNNWINASTE TAGGGGVHGF FPVHTSDQSN AMECEEPVLQ IGYPQYYIPD  240
EGPSSVQRSM PIENNSIIQG WI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-22751703102Developmental protein SEPALLATA 3
4ox0_B4e-22751703102Developmental protein SEPALLATA 3
4ox0_C4e-22751703102Developmental protein SEPALLATA 3
4ox0_D4e-22751703102Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027109717.11e-136MADS-box transcription factor 6-like
RefseqXP_027115031.11e-136MADS-box transcription factor 6-like
RefseqXP_027163327.11e-136MADS-box transcription factor 6
SwissprotQ8LLR11e-129MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A068UKB41e-135A0A068UKB4_COFCA; Uncharacterized protein
STRINGXP_009796076.11e-131(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]