PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5_iso_7

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 398aa MW: 42390.8 Da PI: 4.5248

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5_iso_7	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.2e-06	375	398	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G+Ck G++C + H+ cra_locus_5_iso_7_len_1715_ver_3 375 GQRVCK-FYESGHCKKGASCDYLHP 398 6799.8899***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.07E-6	373	397	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.075	373	398	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.3E-4	377	397	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
XTPNPTEEAL PNPTTKQTDE DQEGKIAEAN QSVLSKVSVQ DSGPNLSSTA SLEVGGARLR 60 EIANEWAGYS LSHAKPSIEE WDSDIFSLSL KQPGAVGDQV TIPNSNSDPV TQSSHSHPAP 120 SMTSWQAVHE PIEFSTLAEE SVSDLLAEVD AMESQSGLAS PTSGMKYSDE RNDCFSSIEE 180 LSPTPDTGKS DACSADVQFP SQPTVIDDPV GTSQADAFDR LKRSGGRSTT SSEGETKSAD 240 APINLREAGS EIHPSQNMVA GNMARSRELE PIDPGWATAQ GNMNMGWGGP AQGFPNVGWG 300 PSMGTSWGNP NLNLAPYNGN VAWDSPRRYG GERFAGSRDW GFQGQDPGYG RGRPTWSRQP 360 HGGGGAGYSR PPPKGQRVCK FYESGHCKKG ASCDYLHP

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

XTPNPTEEAL PNPTTKQTDE DQEGKIAEAN QSVLSKVSVQ DSGPNLSSTA SLEVGGARLR  60
EIANEWAGYS LSHAKPSIEE WDSDIFSLSL KQPGAVGDQV TIPNSNSDPV TQSSHSHPAP  120
SMTSWQAVHE PIEFSTLAEE SVSDLLAEVD AMESQSGLAS PTSGMKYSDE RNDCFSSIEE  180
LSPTPDTGKS DACSADVQFP SQPTVIDDPV GTSQADAFDR LKRSGGRSTT SSEGETKSAD  240
APINLREAGS EIHPSQNMVA GNMARSRELE PIDPGWATAQ GNMNMGWGGP AQGFPNVGWG  300
PSMGTSWGNP NLNLAPYNGN VAWDSPRRYG GERFAGSRDW GFQGQDPGYG RGRPTWSRQP  360
HGGGGAGYSR PPPKGQRVCK FYESGHCKKG ASCDYLHP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027077529.1	1e-161	zinc finger CCCH domain-containing protein 44-like
TrEMBL	A0A068U180	1e-143	A0A068U180_COFCA; Uncharacterized protein
STRING	XP_009600608.1	1e-106	(Nicotiana tomentosiformis)
STRING	PGSC0003DMT400009322	1e-109	(Solanum tuberosum)