PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6008_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 251aa    MW: 29411.4 Da    PI: 8.9084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6008_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.13.8e-07101120121
                                 AP2   1 sgykGVrwdkkrgrWvAeIrd 21 
                                         ++++GVr+++ +g+W+AeIr 
  cra_locus_6008_iso_1_len_923_ver_3 101 KKFRGVRQRP-WGKWAAEIRX 120
                                         59********.********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.137102119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-8102121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
XIKKKKKNNK IQEMNRERKV SEPIKKKLVS NSNFKLPRII RIHVTDCDAT DSSSDEENPN  60
PNQNPGTNSR RRRRRIKKHV NEIRIEEKKR QISCPVSGNA KKFRGVRQRP WGKWAAEIRX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXSL LCSPTSVLRF NNGGKLGEEN KFKWRPLDDG  180
KSQNNSFWND DGLPLDQCFL NEYFDFRSPS PLIYEDQEQE HQVLEEEEGY FDDNIIGGDD  240
DDNLDLGLSN W
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974RRRRRR
26977RRRRRRIKK