PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6046_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 41aa    MW: 4419.03 Da    PI: 8.9448
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6046_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.2e-087231127
                                        GTS--TTTTT-SS-SSS CS
                             zf-CCCH 11 rtGtCkyGdrCkFaHgp 27
                                        ++G+Ck+G+ CkF H++
  cra_locus_6046_iso_1_len_421_ver_3  7 KYGICKFGPACKFDHPE 23
                                        78*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.958124IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-6723IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 41 aa     Download sequence    Send to blast
MRTGSCKYGI CKFGPACKFD HPENWGNRTP SGGARMEAGL S