PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6046_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 435aa    MW: 48385.3 Da    PI: 4.3564
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6046_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.55.5e-09345371127
                                          --S---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                          +++++C++f++tG Cky ++C+++H++
  cra_locus_6046_iso_2_len_1736_ver_3 345 PGQPECSYFLKTGDCKYKSNCRYHHPK 371
                                          5789*********************96 PP
2zf-CCCH361.2e-11392417227
                                          -S---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                          +++ C+f+ r+G+Ck+G+ CkF H++
  cra_locus_6046_iso_2_len_1736_ver_3 392 DQSVCSFYNRYGICKFGPACKFDHPE 417
                                          5789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.061344372IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4344371IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-6346371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-5348370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915390418IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5390417IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-5391418IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9392417IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4395417IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MELHSSDELV PPSDSLKSSQ NFQSPKSSEL GFNTALQTSE TDHRDSIVMD DEELKNQNEQ  60
QHKQFSESFG GRFCSENTPD VDGEMRRSLD EEIHQVIYTE ALNEAVMNLA LEERNASESE  120
LKFWDSVNEE VHHLDQAEGI EIISGLGEGD NTNNVLNKKE AGGEIKNDEI SEVTVEGEHS  180
YGKSGDVDEN EWQNGKEGDE SEDEENYATV EGESGWDHTM SNEDGRDNGG RNYGRRVVYP  240
VRPELRTVAG ADATSGYGNG GSFQLQGAAQ TTPASWSSAP IMFPPTPATP QSNPEWNGYQ  300
VPAYPTSERS LPTPPAFAMN NLTAETNFFS QHQQQLPVDE YPERPGQPEC SYFLKTGDCK  360
YKSNCRYHHP KIRHTRSTSC TLSEKGLPLR PDQSVCSFYN RYGICKFGPA CKFDHPENWG  420
NRTPSGGARM EAGLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123004.17e-87zinc finger CCCH domain-containing protein 67 isoform X1
RefseqXP_027123005.17e-87zinc finger CCCH domain-containing protein 67 isoform X2
RefseqXP_027168673.17e-87zinc finger CCCH domain-containing protein 67 isoform X1
RefseqXP_027168674.16e-87zinc finger CCCH domain-containing protein 67 isoform X2