PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6046_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 306aa    MW: 34496.1 Da    PI: 4.2325
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6046_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.21.4e-13246269427
                                          ---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                          e C ++++tGtCk+G++CkF+H+p
  cra_locus_6046_iso_3_len_1318_ver_3 246 EDCAYYMKTGTCKFGATCKFNHPP 269
                                          89********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.31E-6240270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915242270IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-6242269IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-11246269IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5248268IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MELHSSDELV PPSDSLKSSQ NFQSPKSSEL GFNTALQTSE TDHRDSIVMD DEELKNQNEQ  60
QHKQFSESFG GRFCSENTPD VDGEMRRSLD EEIHQVIYTE ALNEAVMNLA LEERNASESE  120
LKFWDSVNEE VHHLDQAEGI EIISGLGEGD NTNNVLNKKE AGGEIKNDEI SEVTVEGEHS  180
YGKSGDVDEN EWQNGKEGDE SEDEENYATV EGESGWDHTM SNEDGRDNGG RNYGRRVVYP  240
VRPDAEDCAY YMKTGTCKFG ATCKFNHPPR RRNQGVNKER AKPKADDSER PGQTECKVNM  300
LIANFW