PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6046_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 557aa    MW: 61982.6 Da    PI: 4.8162
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6046_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.22.8e-13246269427
                                          ---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                          e C ++++tGtCk+G++CkF+H+p
  cra_locus_6046_iso_6_len_2102_ver_3 246 EDCAYYMKTGTCKFGATCKFNHPP 269
                                          89********************96 PP
2zf-CCCH27.26.8e-09292317227
                                          -S---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                          ++ +C++++ +G Ck+G  Ck++H++
  cra_locus_6046_iso_6_len_2102_ver_3 292 GQTECKYYLTSGGCKFGKACKYSHSR 317
                                          6789********************95 PP
3zf-CCCH41.42.3e-13341365226
                                          -S---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                          ++++C++++rtG CkyG++C+F+H+
  cra_locus_6046_iso_6_len_2102_ver_3 341 GEKECPYYMRTGSCKYGSNCRFNHP 365
                                          7899********************9 PP
4zf-CCCH27.17.4e-09467493127
                                          --S---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                          +++++C++f++tG Cky ++C+++H++
  cra_locus_6046_iso_6_len_2102_ver_3 467 PGQPECSYFLKTGDCKYKSNCRYHHPK 493
                                          5789*********************96 PP
5zf-CCCH35.61.6e-11514539227
                                          -S---SGGGGTS--TTTTT-SS-SSS CS
                              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                          +++ C+f+ r+G+Ck+G+ CkF H++
  cra_locus_6046_iso_6_len_2102_ver_3 514 DQSVCSFYNRYGICKFGPACKFDHPE 539
                                          5789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.01E-6240270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915242270IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-6242269IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10246269IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5248268IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-5290317IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.253290318IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6292317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5293318IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5296318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549339367IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-7339366IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-11341365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6343366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-6345364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061466494IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4466493IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-6468493IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5512539IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915512540IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5513540IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9514539IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-4517539IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MELHSSDELV PPSDSLKSSQ NFQSPKSSEL GFNTALQTSE TDHRDSIVMD DEELKNQNEQ  60
QHKQFSESFG GRFCSENTPD VDGEMRRSLD EEIHQVIYTE ALNEAVMNLA LEERNASESE  120
LKFWDSVNEE VHHLDQAEGI EIISGLGEGD NTNNVLNKKE AGGEIKNDEI SEVTVEGEHS  180
YGKSGDVDEN EWQNGKEGDE SEDEENYATV EGESGWDHTM SNEDGRDNGG RNYGRRVVYP  240
VRPDAEDCAY YMKTGTCKFG ATCKFNHPPR RRNQGVNKER AKPKADDSER PGQTECKYYL  300
TSGGCKFGKA CKYSHSRERS VVPPGAPILE FNLSRPANSP GEKECPYYMR TGSCKYGSNC  360
RFNHPDPTSV AGADATSGYG NGGSFQLQGA AQTTPASWSS APIMFPPTPA TPQSNPEWNG  420
YQVPAYPTSE RSLPTPPAFA MNNLTAETNF FSQHQQQLPV DEYPERPGQP ECSYFLKTGD  480
CKYKSNCRYH HPKIRHTRST SCTLSEKGLP LRPDQSVCSF YNRYGICKFG PACKFDHPEN  540
WGNRTPSGGA RMEAGLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123005.10.0zinc finger CCCH domain-containing protein 67 isoform X2
RefseqXP_027168674.10.0zinc finger CCCH domain-containing protein 67 isoform X2
SwissprotQ9STM41e-108C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A068V5971e-171A0A068V597_COFCA; Uncharacterized protein
STRINGXP_009791086.11e-153(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]