PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6055_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Dof

Protein Properties

Length: 503aa MW: 54523.6 Da PI: 6.084

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6055_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.5e-39	145	205	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s cra_locus_6055_iso_4_len_1948_ver_3 145 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSA 205 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-30	143	202	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-32	147	203	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.919	149	203	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	151	187	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MKEVKDPEIR LFGKKIALPE NGRILPVITA EDGNGGRSKE NSIGSDSDCS LDGKKVIRAE 60 VNEDIEDEKD EADKVXLAGD CETKPEEKDE HSISEETENS KPLSASDDSP DALPMDEDSP 120 TKESGNAESE NEQNDGTNSQ QKKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKSCQ 180 RYWTAGGTMR NVPVGAGRRK NKNSASHCRH ITISEALQAA RIDAPNGFHH PTLKPNGTVL 240 SFGPDIPLCD SMASVLNLAE KKLPNGDRNG FYKVDPVISV SYKGTENGDD CSSGSSVTTS 300 NSMVENGKKG QQEPVIQHIN GFHSPVPCLP GVPWPFPWNS GVPLPAICPT AFPMPFYPAP 360 FPWNCNVASV PGAWSIPWMP PVSPTASQKP SGSSPNSPLG KHSRDGELLN KPNSTKANES 420 PEKKNSESSI LVPKTLRIDD PDEAAKSSIW TTLGIKYDSI SRGGLFKALQ PKGDQKKPLP 480 ATSPVLQANP AALSRSVTFQ ETA

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MKEVKDPEIR LFGKKIALPE NGRILPVITA EDGNGGRSKE NSIGSDSDCS LDGKKVIRAE  60
VNEDIEDEKD EADKVXLAGD CETKPEEKDE HSISEETENS KPLSASDDSP DALPMDEDSP  120
TKESGNAESE NEQNDGTNSQ QKKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKSCQ  180
RYWTAGGTMR NVPVGAGRRK NKNSASHCRH ITISEALQAA RIDAPNGFHH PTLKPNGTVL  240
SFGPDIPLCD SMASVLNLAE KKLPNGDRNG FYKVDPVISV SYKGTENGDD CSSGSSVTTS  300
NSMVENGKKG QQEPVIQHIN GFHSPVPCLP GVPWPFPWNS GVPLPAICPT AFPMPFYPAP  360
FPWNCNVASV PGAWSIPWMP PVSPTASQKP SGSSPNSPLG KHSRDGELLN KPNSTKANES  420
PEKKNSESSI LVPKTLRIDD PDEAAKSSIW TTLGIKYDSI SRGGLFKALQ PKGDQKKPLP  480
ATSPVLQANP AALSRSVTFQ ETA

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027167719.1	0.0	cyclic dof factor 3
TrEMBL	A0A068UVL6	0.0	A0A068UVL6_COFCA; Uncharacterized protein
STRING	Solyc03g115940.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122