PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_60572_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 126aa    MW: 14192.6 Da    PI: 4.2171
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_60572_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS47.23.8e-15191251105
                                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn 73 
                                          lv+ Ll++Ae v ++++  a+al++r + +as  g+++qR+++yf+eAL++r+   ++ ++ + ++ + + +++
  cra_locus_60572_iso_1_len_374_ver_3  19 LVQHLLAAAELVGQEQFDIASALITRCQWIASDIGNAVQRIVFYFAEALQQRIEIeTGRTTLDRIQEQVAYQMK 92 
                                          6899*************************************************986888899999888888888 PP

                                 GRAS  74 sseelaalkl.fsevsPilkfshltaNqaIlea 105
                                           +  +++  l  + v P+ ++ +l+a + I+e+
  cra_locus_60572_iso_1_len_374_ver_3  93 LQVDFHVSFLeCHRVIPFSQVLQLAAVESIVES 125
                                          66666655555899****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.8591126IPR005202Transcription factor GRAS
PfamPF035141.3E-1219125IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
XYSSALSNLS IEETADVELV QHLLAAAELV GQEQFDIASA LITRCQWIAS DIGNAVQRIV  60
FYFAEALQQR IEIETGRTTL DRIQEQVAYQ MKLQVDFHVS FLECHRVIPF SQVLQLAAVE  120
SIVESX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027172080.11e-44DELLA protein RGL1-like
TrEMBLM1AI733e-36M1AI73_SOLTU; Uncharacterized protein
TrEMBLM1AI743e-37M1AI74_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000233454e-37(Solanum tuberosum)
STRINGPGSC0003DMT4000233465e-38(Solanum tuberosum)