PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6071_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family Trihelix
Protein Properties Length: 453aa    MW: 51334.8 Da    PI: 9.0372
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6071_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.57.8e-2848131186
                             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
                                          rW+++e+laL+++r++m+ ++r++ lk+plW+evs+k+ e gf+rs+ +Ckek+en+ k++k++k+ +++r+++
  cra_locus_6071_iso_1_len_1570_ver_3  48 RWPREETLALLKIRSDMDLAFRDSTLKAPLWDEVSRKLGELGFHRSARKCKEKFENIFKYHKRTKDCRSGRQNG 121
                                          8*********************************************************************9777 PP

                             trihelix  75 ssstcpyfdqle 86 
                                          +s  +++f+qle
  cra_locus_6071_iso_1_len_1570_ver_3 122 KS--YRFFEQLE 131
                                          76..******97 PP
2trihelix96.32.8e-30362446186
                             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
                                          rW+k ev aL+++r++++ +++++ lk+plWeevs +m++ g+ r++k+Ckekwen+nk+y+++ke++k+r +e
  cra_locus_6071_iso_1_len_1570_ver_3 362 RWPKAEVEALVRLRTNLGMQFQDNGLKGPLWEEVSLAMKKLGYDRNAKRCKEKWENINKYYRRVKESQKRR-PE 434
                                          8********************************************************************97.9* PP

                             trihelix  75 ssstcpyfdqle 86 
                                          ss+tcpyf+ l+
  cra_locus_6071_iso_1_len_1570_ver_3 435 SSKTCPYFHLLD 446
                                          *********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00145107IPR001005SANT/Myb domain
PfamPF138375.4E-1947132No hitNo description
CDDcd122031.79E-2247112No hitNo description
PROSITE profilePS500907.15547105IPR017877Myb-like domain
SMARTSM007170.026359421IPR001005SANT/Myb domain
PfamPF138377.9E-22361448No hitNo description
PROSITE profilePS500907.422361419IPR017877Myb-like domain
CDDcd122037.75E-23361426No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MVGESSVFLD NSGGGGDGSG GAASSAAEEM VFGGGGEEER GRGEAGNRWP REETLALLKI  60
RSDMDLAFRD STLKAPLWDE VSRKLGELGF HRSARKCKEK FENIFKYHKR TKDCRSGRQN  120
GKSYRFFEQL EMFDNQPSLP SPALNQIQSY AVETTSATEP MVIKPTSVSL DFVASRPTQS  180
LNMDALTPST STTSSSGRDS EGSIKKKRKL VDYFEKLMRE VLEKQENLQN QLLNALEKCE  240
RERMAREEAW KKQQMDRIRK EQEILAHERA IAAAKDAAVM AFLQKISEQT IPMQFPETPV  300
PVTGKHAGTD QVKTPSPLPE NIDKRDTVVE NNINKSDSVI EKAIEQQENG ANENFSQSSA  360
SRWPKAEVEA LVRLRTNLGM QFQDNGLKGP LWEEVSLAMK KLGYDRNAKR CKEKWENINK  420
YYRRVKESQK RRPESSKTCP YFHLLDSLYE RKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209KKKRKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075443.10.0trihelix transcription factor GT-2-like
TrEMBLA0A068UW860.0A0A068UW86_COFCA; Uncharacterized protein
STRINGSolyc11g005380.1.11e-165(Solanum lycopersicum)