PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6071_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 538aa MW: 61006 Da PI: 5.1692

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6071_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.4	9.1e-24	48	128	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 rW+++e+laL+++r++m+ ++r++ lk+plW+evs e gf+rs+ +Ckek+en+ k++k++k+ +++r+++ cra_locus_6071_iso_2_len_2158_ver_3 48 RWPREETLALLKIRSDMDLAFRDSTLKAPLWDEVSG---ELGFHRSARKCKEKFENIFKYHKRTKDCRSGRQNG 118 8********************************6...78*************************9777 PP trihelix 75 ssstcpyfdqle 86 +s +++f+qle cra_locus_6071_iso_2_len_2158_ver_3 119 KS--YRFFEQLE 128 76..****97 PP
2	trihelix	95.9	3.7e-30	359	443	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 rW+k ev aL+++r++++ +++++ lk+plWeevs +m++ g+ r++k+Ckekwen+nk+y+++ke++k+r +e cra_locus_6071_iso_2_len_2158_ver_3 359 RWPKAEVEALVRLRTNLGMQFQDNGLKGPLWEEVSLAMKKLGYDRNAKRCKEKWENINKYYRRVKESQKRR-PE 431 8*******************************************************************97.9 PP trihelix 75 ssstcpyfdqle 86 ss+tcpyf+ l+ cra_locus_6071_iso_2_len_2158_ver_3 432 SSKTCPYFHLLD 443 *********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0035	45	104	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.992	47	102	IPR017877	Myb-like domain
CDD	cd12203	1.37E-19	47	109	No hit	No description
Pfam	PF13837	7.2E-15	47	129	No hit	No description
SMART	SM00717	0.026	356	418	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.422	358	416	IPR017877	Myb-like domain
Pfam	PF13837	1.0E-21	358	445	No hit	No description
CDD	cd12203	5.66E-23	358	423	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MVGESSVFLD NSGGGGDGSG GAASSAAEEM VFGGGGEEER GRGEAGNRWP REETLALLKI 60 RSDMDLAFRD STLKAPLWDE VSGELGFHRS ARKCKEKFEN IFKYHKRTKD CRSGRQNGKS 120 YRFFEQLEMF DNQPSLPSPA LNQIQSYAVE TTSATEPMVI KPTSVSLDFV ASRPTQSLNM 180 DALTPSTSTT SSSGRDSEGS IKKKRKLVDY FEKLMREVLE KQENLQNQLL NALEKCERER 240 MAREEAWKKQ QMDRIRKEQE ILAHERAIAA AKDAAVMAFL QKISEQTIPM QFPETPVPVT 300 GKHAGTDQVK TPSPLPENID KRDTVVENNI NKSDSVIEKA IEQQENGANE NFSQSSASRW 360 PKAEVEALVR LRTNLGMQFQ DNGLKGPLWE EVSLAMKKLG YDRNAKRCKE KWENINKYYR 420 RVKESQKRRP ESSKTCPYFH LLDSLYERKS NRVEQNPDWS GANLKPEDIL MQMMNRQQQQ 480 HQQPQQPQSL IEDGLRENMD QNREDEAEED DEEEDDENGN GYELVANKPS SVASMGVS

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MVGESSVFLD NSGGGGDGSG GAASSAAEEM VFGGGGEEER GRGEAGNRWP REETLALLKI  60
RSDMDLAFRD STLKAPLWDE VSGELGFHRS ARKCKEKFEN IFKYHKRTKD CRSGRQNGKS  120
YRFFEQLEMF DNQPSLPSPA LNQIQSYAVE TTSATEPMVI KPTSVSLDFV ASRPTQSLNM  180
DALTPSTSTT SSSGRDSEGS IKKKRKLVDY FEKLMREVLE KQENLQNQLL NALEKCERER  240
MAREEAWKKQ QMDRIRKEQE ILAHERAIAA AKDAAVMAFL QKISEQTIPM QFPETPVPVT  300
GKHAGTDQVK TPSPLPENID KRDTVVENNI NKSDSVIEKA IEQQENGANE NFSQSSASRW  360
PKAEVEALVR LRTNLGMQFQ DNGLKGPLWE EVSLAMKKLG YDRNAKRCKE KWENINKYYR  420
RVKESQKRRP ESSKTCPYFH LLDSLYERKS NRVEQNPDWS GANLKPEDIL MQMMNRQQQQ  480
HQQPQQPQSL IEDGLRENMD QNREDEAEED DEEEDDENGN GYELVANKPS SVASMGVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	206	KKKRKL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00244	DAP	Transfer from AT1G76890	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027075443.1	0.0	trihelix transcription factor GT-2-like
TrEMBL	A0A068UW86	0.0	A0A068UW86_COFCA; Uncharacterized protein
STRING	Solyc11g005380.1.1	1e-162	(Solanum lycopersicum)