PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_60730_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 105aa MW: 11450.1 Da PI: 8.9111

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_60730_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	13	35	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F+++ L H +H cra_locus_60730_iso_1_len_312_ver_3 13 FECKACKKVFNSHQALGGHRASH 35 89**************9999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.4E-4	6	37	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.17E-6	10	39	No hit	No description
Pfam	PF13912	1.6E-10	13	37	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.076	13	40	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	15	35	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
XNSGNSHSSE GLFECKACKK VFNSHQALGG HRASHKKVKG CYAAKQDQIM IDDAMAVAAD 60 HHEEHVITND HEEFFPHNSK STSSSLQASK FSPSSASASR RKSKX

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates the regulation of male germ cell division by DUO1. {ECO:0000269\|PubMed:24876252}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269\|PubMed:21285328}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090189.1	2e-26	uncharacterized protein LOC105170939
Swissprot	O65499	2e-13	ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBL	A0A2G9HTX7	3e-24	A0A2G9HTX7_9LAMI; Uncharacterized protein
STRING	XP_002511650.1	3e-24	(Ricinus communis)
STRING	XP_002540465.1	1e-24	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1910	22	43