PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6088_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 426aa    MW: 47363.9 Da    PI: 7.2145
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6088_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.1e-32239295259
                                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                          +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+  +++++ei+Y+g+Hnh 
  cra_locus_6088_iso_1_len_2152_ver_3 239 EDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERNL-EGHITEIVYKGNHNHA 295
                                          7****************************************.***************7 PP
2WRKY35.12.7e-11405426122
                                          ---SS-EEEEEEE--TT-SS-E CS
                                 WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                                          ldDgy+WrKYGqK+vkg+++pr
  cra_locus_6088_iso_1_len_2152_ver_3 405 LDDGYRWRKYGQKVVKGNPNPR 426
                                          59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-27227297IPR003657WRKY domain
SuperFamilySSF1182908.5E-24234297IPR003657WRKY domain
SMARTSM007742.1E-33238296IPR003657WRKY domain
PfamPF031065.5E-24239294IPR003657WRKY domain
PROSITE profilePS5081122.355239297IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-13390426IPR003657WRKY domain
SuperFamilySSF1182902.88E-9397426IPR003657WRKY domain
PROSITE profilePS5081116.386400426IPR003657WRKY domain
PfamPF031068.9E-7406426IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MASSGGSLNT SSNSYSNFSP MAPSFIDLLS SNNREEFMNS NNNRSSSNSN SNSFGWGGFP  60
RTDNQVPKFK SFPPSSLPIS PSPVSPSSYL SFPPSLSPSV LLDSPVLFGN SNALPSPTTG  120
TFAGLGTKED DEKKYSEFSF QSQTRPPVSL SSMFQSSAEK SSSQEGWTFM SQQNNKSTES  180
SSSTKTDIHH QSKSTPPNQT NFSHGGNMQT NTNDNNNNNN NNYSHQQPSQ YLREQRKSED  240
GYNWRKYGQK QVKGSENPRS YYKCTFPSCP TKKKVERNLE GHITEIVYKG NHNHAKPQST  300
RRSSSSSSIQ NPQFLNSEFS NSQSNTFGEI DSFVNNENSS ASFGDDDFEQ NSPVSNSRDD  360
DDSEQPDAKR WKVDQNENEA ISVSGSRTVR EPRIVVQTTS DIDILDDGYR WRKYGQKVVK  420
GNPNPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-152402971674WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068692.11e-153probable WRKY transcription factor 33
TrEMBLA0A068VGV01e-151A0A068VGV0_COFCA; Uncharacterized protein
STRINGXP_009797862.11e-127(Nicotiana sylvestris)