PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_61188_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 102aa    MW: 10687.8 Da    PI: 5.8368
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_61188_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.41.5e-161449134
                                 GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34
                                         C++Cg ++  Tp++Rrgp g+++LCnaCGl+++ kg
  cra_locus_61188_iso_1_len_398_ver_3 14 CRHCGISSksTPMMRRGPAGPRSLCNACGLKWANKG 49
                                         *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501148.616865IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-11862IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.52E-12960No hitNo description
Gene3DG3DSA:3.30.50.101.8E-151255IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.32E-121363No hitNo description
PfamPF003201.6E-141449IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401441IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
WNEGSGQEEQ ETSCRHCGIS SKSTPMMRRG PAGPRSLCNA CGLKWANKGI LRDISKVPTP  60
GAQDQTAKSG EQSNGEPNGS DAMAAAAIII PDGDNTMVTA ER
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609389.12e-68PREDICTED: GATA transcription factor 28-like
RefseqXP_016433120.12e-69PREDICTED: GATA transcription factor 24-like
SwissprotQ8H1G05e-25GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A1S3WZH34e-68A0A1S3WZH3_TOBAC; GATA transcription factor 24-like
STRINGXP_009609389.19e-68(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348