PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6172_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Dof

Protein Properties

Length: 504aa MW: 54143.8 Da PI: 5.2361

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6172_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	1e-39	139	199	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s cra_locus_6172_iso_2_len_2208_ver_3 139 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 199 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	137	196	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.0E-32	141	197	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	143	197	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	145	181	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MSEGKDPAIK LFGMTIQLPD NPVAAPSQSS ECGGEGSPQS PPSEDPPASP NPLSEEDASL 60 SSGRAEQHSG EELQEVTGDD GKAEDGAGPM MSEESDPNLV KENPGAESVD NVAAPAQASK 120 NEEDQNETGN AQDKTPKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRHFC KNCQRYWTAG 180 GTMRNVPVGA GRRKNKNSAS QYRQITVSET LQTSRPDLPN GIHYPALKPN GTVLTFGSDA 240 PLCESMASVL NIAEKTARNG FHRPEELRIP NPYGTGGNGD EQSSASAVTV SSSKDEASKD 300 GSPDKLMPPN CHGIPPQLSC FPGPPWPYPW NSVQWSPSVP PAVFCPATFP MHFYAAPPYW 360 GCTVPGAWNV PWLNPPNTSQ SHTPPTSGPN SPTLGKHSRD DNTLKSINSE KEESQKESNA 420 EKCLWFPKTL RIDDPGEAAR SSIWATLGIK NVKLNSTCGG GGLFKPFQSK GSEKEKTINV 480 SETSSVLQAN PAALSRSVSF RESS

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MSEGKDPAIK LFGMTIQLPD NPVAAPSQSS ECGGEGSPQS PPSEDPPASP NPLSEEDASL  60
SSGRAEQHSG EELQEVTGDD GKAEDGAGPM MSEESDPNLV KENPGAESVD NVAAPAQASK  120
NEEDQNETGN AQDKTPKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRHFC KNCQRYWTAG  180
GTMRNVPVGA GRRKNKNSAS QYRQITVSET LQTSRPDLPN GIHYPALKPN GTVLTFGSDA  240
PLCESMASVL NIAEKTARNG FHRPEELRIP NPYGTGGNGD EQSSASAVTV SSSKDEASKD  300
GSPDKLMPPN CHGIPPQLSC FPGPPWPYPW NSVQWSPSVP PAVFCPATFP MHFYAAPPYW  360
GCTVPGAWNV PWLNPPNTSQ SHTPPTSGPN SPTLGKHSRD DNTLKSINSE KEESQKESNA  420
EKCLWFPKTL RIDDPGEAAR SSIWATLGIK NVKLNSTCGG GGLFKPFQSK GSEKEKTINV  480
SETSSVLQAN PAALSRSVSF RESS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074815.1	0.0	cyclic dof factor 2-like isoform X2
Refseq	XP_027150675.1	0.0	cyclic dof factor 2-like isoform X2
TrEMBL	A0A068U1T1	0.0	A0A068U1T1_COFCA; Uncharacterized protein
STRING	VIT_14s0108g00980.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122