PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6180_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 175aa    MW: 20396.3 Da    PI: 9.9567
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6180_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.12.6e-29959151
                                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                         krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
  cra_locus_6180_iso_4_len_1064_ver_3  9 KRIENKISRQVTFSKRRCGLLKKAHEISVLCDADVALIVFSTKGKLFEYSS 59
                                         79***********************************************96 PP
2K-box90.23.7e-30871611084
                                K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                                          +++ + +++ ++ kL ++ie Lqr++Rh++GedL++L+l+eLq+LeqqL++slk+iR++Kn+l+ e+++elqkk
  cra_locus_6180_iso_4_len_1064_ver_3  87 QSEPQDNWSVQYPKLVSKIELLQRNIRHYMGEDLDPLNLRELQSLEQQLDTSLKRIRTRKNQLMQESVSELQKK 160
                                          4556789******************************************************************9 PP

                                K-box  84 e 84 
                                           
  cra_locus_6180_iso_4_len_1064_ver_3 161 V 161
                                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.749161IPR002100Transcription factor, MADS-box
CDDcd002651.36E-40277No hitNo description
SuperFamilySSF554551.57E-32284IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-303859IPR002100Transcription factor, MADS-box
PfamPF014864.2E-2588161IPR002487Transcription factor, K-box
PROSITE profilePS5129714.42191175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGRGRVELKR IENKISRQVT FSKRRCGLLK KAHEISVLCD ADVALIVFST KGKLFEYSST  60
DSSMESILER YERYSHAEKR LTALHDQSEP QDNWSVQYPK LVSKIELLQR NIRHYMGEDL  120
DPLNLRELQS LEQQLDTSLK RIRTRKNQLM QESVSELQKK VCSPSPSRKE SKGGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-22175173MEF2 CHIMERA
6byy_B2e-22175173MEF2 CHIMERA
6byy_C2e-22175173MEF2 CHIMERA
6byy_D2e-22175173MEF2 CHIMERA
6bz1_A2e-22175173MEF2 CHIMERA
6bz1_B2e-22175173MEF2 CHIMERA
6bz1_C2e-22175173MEF2 CHIMERA
6bz1_D2e-22175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338337.13e-93PREDICTED: truncated transcription factor CAULIFLOWER A
SwissprotD7SMN65e-87FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLM0ZLS18e-94M0ZLS1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000034851e-92(Solanum tuberosum)
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]