PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6180_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 29053.1 Da    PI: 9.5674
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6180_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.25.1e-29959151
                                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                         krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
  cra_locus_6180_iso_5_len_1040_ver_3  9 KRIENKISRQVTFSKRRCGLLKKAHEISVLCDADVALIVFSTKGKLFEYSS 59
                                         79***********************************************96 PP
2K-box100.32.8e-338717710100
                                K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                                          +++ + +++ ++ kL ++ie Lqr++Rh++GedL++L+l+eLq+LeqqL++slk+iR++Kn+l+ e+++elqkk
  cra_locus_6180_iso_5_len_1040_ver_3  87 QSEPQDNWSVQYPKLVSKIELLQRNIRHYMGEDLDPLNLRELQSLEQQLDTSLKRIRTRKNQLMQESVSELQKK 160
                                          4556789******************************************************************* PP

                                K-box  84 ekelqeenkaLrkklee 100
                                          ek+lqe+n++L kkl+e
  cra_locus_6180_iso_5_len_1040_ver_3 161 EKALQEQNNSLAKKLKE 177
                                          **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.749161IPR002100Transcription factor, MADS-box
CDDcd002651.46E-41277No hitNo description
SuperFamilySSF554553.79E-32283IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.2E-2888175IPR002487Transcription factor, K-box
PROSITE profilePS5129717.1191181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRGRVELKR IENKISRQVT FSKRRCGLLK KAHEISVLCD ADVALIVFST KGKLFEYSST  60
DSSMESILER YERYSHAEKR LTALHDQSEP QDNWSVQYPK LVSKIELLQR NIRHYMGEDL  120
DPLNLRELQS LEQQLDTSLK RIRTRKNQLM QESVSELQKK EKALQEQNNS LAKKLKESEK  180
VDSDQQTQLV QRRLVQSSTA MLLPDPPPHS SLQLPSLTIG GPFLATGGGM DEGGGGAQDR  240
HGSKSLVPPW LLPHIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-22175173MEF2 CHIMERA
6byy_B7e-22175173MEF2 CHIMERA
6byy_C7e-22175173MEF2 CHIMERA
6byy_D7e-22175173MEF2 CHIMERA
6bz1_A8e-22175173MEF2 CHIMERA
6bz1_B8e-22175173MEF2 CHIMERA
6bz1_C8e-22175173MEF2 CHIMERA
6bz1_D8e-22175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608614.11e-118PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X4
RefseqXP_016466964.11e-118PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotD7SMN61e-101FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A1S3ZRN01e-117A0A1S3ZRN0_TOBAC; truncated transcription factor CAULIFLOWER A-like isoform X2
STRINGXP_009608611.11e-116(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]