PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6181_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HSF
Protein Properties Length: 138aa    MW: 14984.6 Da    PI: 3.9245
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6181_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind24.95.2e-08109138231
                                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES CS
                         HSF_DNA-bind   2 Flkklyeiledeelkeliswsengnsfvvl 31 
                                          Fl+k+y+++ed++l+++isw ++g+sfvv+
  cra_locus_6181_iso_1_len_1156_ver_3 109 FLSKTYDLVEDPSLDSIISWGARGQSFVVW 138
                                          9***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-8103138IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-6105138IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.0E-5109138IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MNPIDKSKNP VSSPSNSPPS SSRPPGTHSG EIPSPTYTMP FPLYSAQIEP GFSTNYPFSV  60
TSPFIDFDSI QNLEETIPTL PTTTAEADEG FTGVPQPLDI LHETPVPPFL SKTYDLVEDP  120
SLDSIISWGA RGQSFVVW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027069385.12e-26heat stress transcription factor A-3-like isoform X1
RefseqXP_027173476.11e-26heat stress transcription factor A-3
TrEMBLA0A068V4C17e-24A0A068V4C1_COFCA; Uncharacterized protein
STRINGGorai.006G158000.13e-17(Gossypium raimondii)
STRINGevm.model.supercontig_5.774e-18(Carica papaya)