PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_62127_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

M-type_MADS

Protein Properties

Length: 94aa MW: 10799.2 Da PI: 5.7652

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_62127_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	59.7	3.6e-19	1	33	19	51
HHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 19 gilKKAeELSvLCdaevaviifsstgklyeyss 51 g++KKAeELSvLCda+va+iifss+gkl+eyss cra_locus_62127_iso_1_len_282_ver_3 1 GLFKKAEELSVLCDADVALIIFSSNGKLFEYSS 33 8******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.6E-8	1	34	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.58E-19	1	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-15	1	31	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.619	1	35	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
GLFKKAEELS VLCDADVALI IFSSNGKLFE YSSSSMKEIL ERRDLHSKNL EKLDQPSLEL 60 QLVENSNYSR LSKEISEKSH RLRQMRGEEL QGLN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016549600.1	6e-59	PREDICTED: MADS-box protein JOINTLESS isoform X2
Swissprot	Q9FUY6	5e-58	JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBL	A0A1U8F1S7	1e-57	A0A1U8F1S7_CAPAN; MADS-box protein JOINTLESS isoform X2
STRING	Solyc11g010570.1.1	2e-56	(Solanum lycopersicum)
STRING	XP_009783886.1	2e-56	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA938	23	77

Publications ? help Back to Top
Nakano T,Kato H,Shima Y,Ito Y Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities. Plant Cell Physiol., 2015. 56(6): p. 1097-106 [PMID:25746985]