PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_62259_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family Dof
Protein Properties Length: 186aa    MW: 21258.7 Da    PI: 6.8633
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_62259_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof57.52.9e-182311039
                               zf-Dof 10 rCdstntkfCyynnyslsqPryfCkaCrry 39
                                         rC+stntkfCyynnyslsqPryfCk+Crry
  cra_locus_62259_iso_1_len_555_ver_3  2 RCNSTNTKFCYYNNYSLSQPRYFCKTCRRY 31
                                         9***************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088416.693152IPR003851Zinc finger, Dof-type
PfamPF027011.0E-14231IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-11231IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
XRCNSTNTKF CYYNNYSLSQ PRYFCKTCRR YXXXXXXXXX XXXXXXXXXX XXXSSSSINS  60
NPNSSSKKIC LPDPKIHHPH DLNLAYNPPD FINGQISQFF AFDPTNPNID LTTTTSTSSA  120
MELFKTAGNI MASDHFNPLN DHQFKPSLGF SLDGLEINGL QDHPSRIIFP FEDLKNSSIN  180
EFDHQX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075948.13e-37dof zinc finger protein DOF4.6-like
TrEMBLA0A1Q3CRH42e-31A0A1Q3CRH4_CEPFO; Zf-Dof domain-containing protein