PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_62259_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Dof

Protein Properties

Length: 186aa MW: 20936.7 Da PI: 8.4825

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_62259_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.3	1e-35	2	54	10	62
zf-Dof 10 rCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 rC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rkn+k+s cra_locus_62259_iso_2_len_555_ver_3 2 RCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTAGGSLRNVPVGGGSRKNNKRS 54 9************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	27.028	1	52	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-20	2	46	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-29	2	52	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
XRCNSTNTKF CYYNNYSLSQ PRYFCKTCRR YWTAGGSLRN VPVGGGSRKN NKRSSSSINS 60 NPNSSSKKIC LPDPKIHHPH DLNLAYNPPD FINGQISQFF AFDPTNPNID LTTTTSTSSA 120 MELFKTAGNI MASDHFNPLN DHQFKPSLGF SLDGLEINGL QDHPSRIIFP FEDLKNSSIN 180 EFDHQX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075948.1	1e-51	dof zinc finger protein DOF4.6-like
TrEMBL	A0A1Q3CRH4	8e-50	A0A1Q3CRH4_CEPFO; Zf-Dof domain-containing protein
STRING	XP_007136465.1	9e-49	(Phaseolus vulgaris)