PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_62361_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 140aa    MW: 16449.8 Da    PI: 9.0675
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_62361_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.33.2e-31150251
                                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                         rienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++gklye++s
  cra_locus_62361_iso_1_len_420_ver_3  1 RIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALVIFSNRGKLYEFCS 50
                                         7***********************************************96 PP
2K-box74.72.6e-2569140475
                                K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                                           + ++  + +++s+++e+ kLk+++e+Lq+ qRhllG++L++L++ +L++Le qL++slk+iRs++++l+l+
  cra_locus_62361_iso_1_len_420_ver_3  69 LEVNRSIKDNEQSSYREYLKLKAKYESLQQYQRHLLGDELGPLTIDDLEHLEVQLDTSLKHIRSTRTQLMLD 140
                                          56666677889***********************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003199.1E-27148IPR002100Transcription factor, MADS-box
CDDcd002651.04E-37169No hitNo description
PROSITE profilePS5006628.385152IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-30169IPR002100Transcription factor, MADS-box
SMARTSM004327.8E-30151IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-191429IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-192950IPR002100Transcription factor, MADS-box
PfamPF014869.3E-2076140IPR002487Transcription factor, K-box
PROSITE profilePS5129711.97779140IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
RIENKINRQV TFAKRRNGLL KKAYELSVLC DAEVALVIFS NRGKLYEFCS SNNMLKTLDR  60
YQKCSYGTLE VNRSIKDNEQ SSYREYLKLK AKYESLQQYQ RHLLGDELGP LTIDDLEHLE  120
VQLDTSLKHI RSTRTQLMLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-1966140178Developmental protein SEPALLATA 3
4ox0_B1e-1966140178Developmental protein SEPALLATA 3
4ox0_C1e-1966140178Developmental protein SEPALLATA 3
4ox0_D1e-1966140178Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233911.17e-96developmental protein SEPALLATA 1-like
RefseqXP_006338336.18e-96PREDICTED: developmental protein SEPALLATA 1 isoform X2
RefseqXP_010315869.17e-96MADS-box protein isoform X1
RefseqXP_015064043.16e-96developmental protein SEPALLATA 1-like isoform X1
RefseqXP_015064044.16e-96developmental protein SEPALLATA 1-like isoform X2
RefseqXP_015162103.18e-96PREDICTED: developmental protein SEPALLATA 1 isoform X1
SwissprotQ8LLR23e-76MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLQ8VXG01e-94Q8VXG0_SOLLC; MADS-box protein
STRINGSolyc02g089200.2.12e-95(Solanum lycopersicum)
STRINGPGSC0003DMT4000034833e-95(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]