PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_63478_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

SBP

Protein Properties

Length: 154aa MW: 17458.2 Da PI: 8.5816

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_63478_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.7	1e-40	77	152	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 C ve+C++d+++ k y+rrhkvC +h+ka+vvl++g+++rfCqqCsrfhelsefD++krsCr rLa+hnerrrk cra_locus_63478_iso_1_len_460_ver_3 77 CLVENCTTDMTDGKPYYRRHKVCAFHAKAAVVLLAGTQKRFCQQCSRFHELSEFDDAKRSCRMRLAGHNERRRK 150 ************************************************************************** PP -- CS SBP 76 kq 77 ++ cra_locus_63478_iso_1_len_460_ver_3 151 SS 152 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.3E-31	70	138	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	29.692	74	151	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.59E-36	76	152	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.8E-31	77	150	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
XSSDLGRGGS LVSPSFQLQF HWFHLCKGME TSTEGKTIVE VPLSDEETEE EENKNKRAMT 60 PCARKAYSAS GSSQISCLVE NCTTDMTDGK PYYRRHKVCA FHAKAAVVLL AGTQKRFCQQ 120 CSRFHELSEF DDAKRSCRMR LAGHNERRRK SSYX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-34	69	150	2	84	squamosa promoter binding protein-like 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096328.1	2e-50	squamosa promoter-binding protein 1
Swissprot	Q38741	1e-52	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A2G9GQ12	6e-52	A0A2G9GQ12_9LAMI; Squamosa promoter-binding-like protein
STRING	Migut.M01124.1.p	2e-45	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA749	24	105

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]