PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_63860_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 120aa    MW: 13703 Da    PI: 8.7046
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_63860_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.54.5e-3523117199
                                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 
                                          lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+++d++k++PwdLp      e+e yfFs+r+ ky++g+r+
  cra_locus_63860_iso_1_len_357_ver_3  23 LPPGFRFHPTDEELVVQYLKRKVFSCPLPA-SIIPDIDLHKSDPWDLPGD---LEQERYFFSTREVKYPNGNRS 92 
                                          79****************************.89***************54...46799**************** PP

                                  NAM  75 nratksgyWkatgkdkevlskkgel 99 
                                          nrat+sgyWkatg dk+++s+kg++
  cra_locus_63860_iso_1_len_357_ver_3  93 NRATNSGYWKATGLDKQIVSSKGQQ 117
                                          *******************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-3819115IPR003441NAC domain
PROSITE profilePS5100537.65523120IPR003441NAC domain
PfamPF023651.1E-1624108IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
XRHVCESTGM EKPSFVKDGV LRLPPGFRFH PTDEELVVQY LKRKVFSCPL PASIIPDIDL  60
HKSDPWDLPG DLEQERYFFS TREVKYPNGN RSNRATNSGY WKATGLDKQI VSSKGQQLAX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-332111915115NO APICAL MERISTEM PROTEIN
1ut4_B2e-332111915115NO APICAL MERISTEM PROTEIN
1ut7_A2e-332111915115NO APICAL MERISTEM PROTEIN
1ut7_B2e-332111915115NO APICAL MERISTEM PROTEIN
3swm_A3e-332111918118NAC domain-containing protein 19
3swm_B3e-332111918118NAC domain-containing protein 19
3swm_C3e-332111918118NAC domain-containing protein 19
3swm_D3e-332111918118NAC domain-containing protein 19
3swp_A3e-332111918118NAC domain-containing protein 19
3swp_B3e-332111918118NAC domain-containing protein 19
3swp_C3e-332111918118NAC domain-containing protein 19
3swp_D3e-332111918118NAC domain-containing protein 19
4dul_A2e-332111915115NAC domain-containing protein 19
4dul_B2e-332111915115NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238078.11e-67NAC domain-containing protein
RefseqXP_002297860.13e-67NAC domain-containing protein 83
RefseqXP_028214641.11e-67NAC domain-containing protein 83-like
SwissprotQ9FY932e-59NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0B2P6893e-66A0A0B2P689_GLYSO; NAC domain-containing protein 29
TrEMBLA0A0F6V0F56e-66A0A0F6V0F5_POPTO; Apical meristem (NAM) family protein
TrEMBLB2ZGQ73e-66B2ZGQ7_SOYBN; NAC domain protein
STRINGPOPTR_0001s13380.11e-66(Populus trichocarpa)
STRINGGLYMA18G53954.15e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]