PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6393_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 167aa MW: 19092.4 Da PI: 10.6012

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6393_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	10	32	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H cra_locus_6393_iso_1_len_1011_ver_3 10 SCSVCSRVYPTSRLLSIHVSEvH 32 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	2.1	9	32	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	11	32	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.42	47	72	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	49	72	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
XHYMARHSAS CSVCSRVYPT SRLLSIHVSE VHDSFFQAKV ARGFPMYECL VEGCGVKLKN 60 YKSRQQHLVD KHKFPTSFEF FKKAPPSKKQ RQKNQQKKSL ANTEEVSRTM QIDRDATNDL 120 VSAISKLSTS DTPSSISFGR RNTRGLTFVP RAVQRDRRPD SSDEMKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	93	KKQRQKN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447049.1	2e-89	zinc finger protein 511
Refseq	XP_006470078.1	2e-89	zinc finger protein 511
TrEMBL	V4W2X6	5e-88	V4W2X6_9ROSI; Uncharacterized protein
STRING	XP_006470078.1	8e-89	(Citrus sinensis)
STRING	XP_006447049.1	8e-89	(Citrus clementina)