PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6393_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 236aa MW: 26477 Da PI: 9.9507

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6393_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.0003	79	101	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H cra_locus_6393_iso_5_len_1218_ver_3 79 SCSVCSRVYPTSRLLSIHVSEvH 101 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.26	51	76	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	53	76	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.1	78	101	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	80	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.42	116	141	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	118	141	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
XCTHGLPLPL EFRPGFPSYI TRTCASNCLS SLGHASKESM NLIFPAFGSK IFCPIVGCGA 60 HLKSLDAFED HYMARHSASC SVCSRVYPTS RLLSIHVSEV HDSFFQAKVA RGFPMYECLV 120 EGCGVKLKNY KSRQQHLVDK HKFPTSFEFF KKAPPSKKQR QKNQQKKSLA NTEEVSRTMQ 180 IDRDATNDLV SAISKLSTSD TPSSISFGRR NTRGLTFVPR AVQRDRRPDS SDEMKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	162	KKQRQKN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447049.1	1e-101	zinc finger protein 511
Refseq	XP_006470078.1	1e-101	zinc finger protein 511
TrEMBL	A0A2R6RJX9	1e-100	A0A2R6RJX9_ACTCH; Zinc finger protein
STRING	XP_006470078.1	1e-100	(Citrus sinensis)
STRING	XP_006447049.1	1e-100	(Citrus clementina)